5ORJ Transferase date Aug 16, 2017
title The Crystal Structure Of Ck2alpha In Complex With Compound 3
authors P.Brear, C.De Fusco, J.Iegre, M.Yoshida, S.Mitchell, M.Rossmann, L H.Sore, M.Hyvonen, D.Spring
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: B, A
Fragment: Residues 2-329 And N-Terminal Extension Gsmdiefdddadddgsgsgsgsgs;
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phat4
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.790 68.597 333.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand A4Q, ADP, IHP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSecond-generation CK2alpha inhibitors targeting the alphaD pocket., Iegre J, Brear P, De Fusco C, Yoshida M, Mitchell SL, Rossmann M, Carro L, Sore HF, Hyvonen M, Spring DR, Chem Sci. 2018 Feb 20;9(11):3041-3049. doi: 10.1039/c7sc05122k. eCollection 2018 , Mar 21. PMID:29732088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (5orj.pdb1.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 5ORJ
  • CSU: Contacts of Structural Units for 5ORJ
  • Structure Factors (6723 Kb)
  • Retrieve 5ORJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ORJ from S2C, [Save to disk]
  • View 5ORJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ORJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5orj_B] [5orj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ORJ
  • Community annotation for 5ORJ at PDBWiki (http://pdbwiki.org)

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