5OSG Ribosome date Aug 17, 2017
title Structure Of Ksrp In Context Of Leishmania Donovani 80s
authors J.Brito Querido, E.Mancera-Martinez, Q.Vicens, A.Bochler, J.Chic A.Simonetti, Y.Hashem
compound source
Molecule: Rna Binding Protein, Putative
Chain: h
Synonym: Ksrp
Engineered: Yes
Organism_scientific: Leishmania Donovani
Organism_taxid: 5661
Gene: Ldbpk_320790
Expression_system: Leishmania Donovani
Expression_system_taxid: 5661

Molecule: 18s Rrna
Chain: 2
Engineered: Yes

Organism_scientific: Leishmania Donovani
Organism_taxid: 5661
Expression_system: Leishmania Donovani
Expression_system_taxid: 5661

Molecule: 40s Ribosomal Protein S6
Chain: P
Synonym: Es6
Engineered: Yes

Organism_scientific: Leishmania Donovani
Organism_taxid: 5661
Gene: Rps6, L3640.11, Lmj_1130, Lmjf21.1780, Lmjf_21_1780
Expression_system: Leishmania Donovani
Expression_system_taxid: 5661
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
P


h


Primary referenceThe cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein., Brito Querido J, Mancera-Martinez E, Vicens Q, Bochler A, Chicher J, Simonetti A, Hashem Y, Structure. 2017 Oct 13. pii: S0969-2126(17)30305-2. doi:, 10.1016/j.str.2017.09.014. PMID:29107485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5osg.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 5OSG
  • Retrieve 5OSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OSG from S2C, [Save to disk]
  • View 5OSG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OSG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5osg_P] [5osg_2] [5osg_h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OSG
  • Community annotation for 5OSG at PDBWiki (http://pdbwiki.org)

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