5OTI Transferase date Aug 22, 2017
title The Crystal Structure Of Ck2alpha In Complex With Compound 2
authors P.Brear, C.De Fusco, J.Iegre, M.Yoshida, S.Mitchell, M.Rossmann, L H.Sore, M.Hyvonen, D.Spring
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Fragment: Residues 2-329
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phat2
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.597 46.034 63.196 90.00 111.42 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand ACT, AOK enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSecond-generation CK2alpha inhibitors targeting the alphaD pocket., Iegre J, Brear P, De Fusco C, Yoshida M, Mitchell SL, Rossmann M, Carro L, Sore HF, Hyvonen M, Spring DR, Chem Sci. 2018 Feb 20;9(11):3041-3049. doi: 10.1039/c7sc05122k. eCollection 2018 , Mar 21. PMID:29732088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5oti.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5OTI
  • CSU: Contacts of Structural Units for 5OTI
  • Structure Factors (4775 Kb)
  • Retrieve 5OTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OTI from S2C, [Save to disk]
  • View 5OTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OTI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oti_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OTI
  • Community annotation for 5OTI at PDBWiki (http://pdbwiki.org)

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