5OUP Lipid Binding Protein date Aug 24, 2017
title Structure Of Tgplp1 Macpf Domain
authors T.Ni, R.J.C.Gilbert
compound source
Molecule: Perforin-Like Protein 1
Chain: A
Engineered: Yes
 Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Plp1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 65
R_factor 0.191 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.860 104.860 52.010 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.03 Å
ligand NAG enzyme
Primary referenceStructures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1., Ni T, Williams SI, Rezelj S, Anderluh G, Harlos K, Stansfeld PJ, Gilbert RJC, Sci Adv. 2018 Mar 21;4(3):eaaq0762. doi: 10.1126/sciadv.aaq0762. eCollection 2018, Mar. PMID:29750191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5oup.pdb1.gz) 631 Kb
  • LPC: Ligand-Protein Contacts for 5OUP
  • CSU: Contacts of Structural Units for 5OUP
  • Structure Factors (543 Kb)
  • Retrieve 5OUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OUP from S2C, [Save to disk]
    • View 5OUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oup_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OUP
  • Community annotation for 5OUP at PDBWiki (http://pdbwiki.org)

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