5OWC Lipid Binding Protein date Aug 31, 2017
title Indole-2 Carboxamides As Selective Secreted Phospholipase A2 (Spla2-X) Inhibitors
authors J.S.Sandmark, R.G.Roth, L.Knerr, C.Bodin, D.Pettersen
compound source
Molecule: Group 10 Secretory Phospholipase A2
Chain: A, B
Synonym: Group X Secretory Phospholipase A2,Spla2-X, Phosphatidylcholine 2-Acylhydrolase 10;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pla2g10
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Gold
Expression_system_vector_type: Pet24
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
27.850 86.510 103.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
enzyme Hydrolase E.C. BRENDA
A, B
  • positive regulation of lipid...

  • Primary referenceDiscovery of a Series of Indole-2 Carboxamides as Selective Secreted Phospholipase A2 Type X (sPLA2-X) Inhibitors., Knerr L, Giordanetto F, Nordberg P, Pettersen D, Selmi N, Beisel HG, de la Motte H, Olsson T, Perkins TDJ, Herslof M, Mansson A, Dahlstrom M, Starke I, Broddefalk J, Saarinen G, Klingegard F, Hurt-Camejo E, Rosengren B, Brengdahl J, Jansen F, Rohman M, Sandmark J, Hallberg K, Akerud T, Roth RG, Ahlqvist M, ACS Med Chem Lett. 2018 Jun 23;9(7):594-599. doi: 10.1021/acsmedchemlett.7b00505., eCollection 2018 Jul 12. PMID:30034585
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5owc.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 5OWC
  • Structure Factors (676 Kb)
  • Retrieve 5OWC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OWC from S2C, [Save to disk]
  • View 5OWC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OWC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5owc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5owc_B] [5owc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OWC
  • Community annotation for 5OWC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science