5P1W	Hydrolase	date	Jun 28, 2016
title	Automated Refinement Of Diffraction Data Obtained From An Endothiapepsin Crystal Treated With Fragment 115
authors	J.Schiebel, A.Heine, G.Klebe
compound		source
Molecule: Endothiapepsin Chain: A Ec: 3.4.23.22		Organism_scientific: Cryphonectria Parasitica Organism_taxid: 5116
symmetry	Space Group: P 1 21 1	R_factor 0.130 R_Free 0.151
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.365 73.388 53.157 90.00 109.72 90.00
method	X-Ray Diffraction	resolution	1.23 Å
ligand		enzyme	Hydrolase E.C.3.4.23.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	High-Throughput Crystallography: Reliable and Efficient Identification of Fragment Hits., Schiebel J, Krimmer SG, Rower K, Knorlein A, Wang X, Park AY, Stieler M, Ehrmann FR, Fu K, Radeva N, Krug M, Huschmann FU, Glockner S, Weiss MS, Mueller U, Klebe G, Heine A, Structure. 2016 Aug 2;24(8):1398-409. doi: 10.1016/j.str.2016.06.010. Epub 2016, Jul 21. PMID:27452405

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (5p1w.pdb1.gz) 143 Kb CSU: Contacts of Structural Units for 5P1W Structure Factors (821 Kb) Retrieve 5P1W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5P1W from S2C, [Save to disk] Re-refined 5p1w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5P1W

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5p1w_A] [5p1w] SWISS-PROT database: Domain organization of by SWISSPFAM

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