5P9X Transferase date Oct 19, 2016
title Humanized Rat Catechol O-Methyltransferase In Complex With N 3s,4r,5r)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Pr Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide
authors A.Ehler, C.Lerner, M.G.Rudolph
compound source
Molecule: Catechol O-Methyltransferase
Chain: A
Fragment: Soluble Form, Residues 44-264
Synonym: Humanized Rat Comt
Ec: 2.1.1.6
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Comt
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.160 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.964 54.087 80.776 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.12 Å
ligand 7JO, CL, MG, NHE, SO4 enzyme Transferase E.C.2.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5p9x.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5P9X
  • CSU: Contacts of Structural Units for 5P9X
  • Structure Factors (10522 Kb)
  • Retrieve 5P9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5P9X from S2C, [Save to disk]
    • View 5P9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5P9X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5p9x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5P9X
  • Community annotation for 5P9X at PDBWiki (http://pdbwiki.org)

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