5Q1J Cell Cycle date May 15, 2017
title Pandda Analysis Group Deposition -- Crystal Structure Of Dcl Complex With Fmsoa000341b
authors J.A.Newman, H.Aitkenhead, S.Y.Lee, K.Kupinska, N.Burgess-Brown, R T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.G
compound source
Molecule: Dna Cross-Link Repair 1a Protein
Chain: A
Fragment: Unp Residues 698-1040
Synonym: Dclre1a, Snm1 Homolog A, Hsnm1a
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dclre1a, Kiaa0086, Snm1, Snm1a
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.257 57.216 115.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand 9KS, MLI, NI enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5q1j.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5Q1J
  • CSU: Contacts of Structural Units for 5Q1J
  • Structure Factors (6817 Kb)
  • Retrieve 5Q1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Q1J from S2C, [Save to disk]
    • View 5Q1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Q1J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5q1j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Q1J
  • Community annotation for 5Q1J at PDBWiki (http://pdbwiki.org)

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