5QIB Oxidoreductase date May 22, 2018
title Pandda Analysis Group Deposition Of Models With Modelled Eve Bound Ligands) -- Crystal Structure Of Hao1 In Complex With Fmopl000388a
authors S.Mackinnon, G.A.Bezerra, T.Krojer, A.R.Bradley, R.Talon, J.Brand A.Douangamath, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountr U.Oppermann, P.E.Brennan, W.W.Yue
compound source
Molecule: Hydroxyacid Oxidase 1
Chain: A
Synonym: Haox1,Glycolate Oxidase,Gox
Ec: 1.1.3.15
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hao1, Gox1, Haox1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.187 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.996 97.996 81.741 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand FNR, GX7 enzyme Oxidoreductase E.C.1.1.3.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5qib.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5QIB
  • CSU: Contacts of Structural Units for 5QIB
  • Structure Factors (10168 Kb)
  • Retrieve 5QIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QIB from S2C, [Save to disk]
    • View 5QIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5QIB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qib_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5QIB
  • Community annotation for 5QIB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science