5QJX	Hydrolase	date	Oct 31, 2018
title	Pandda Analysis Group Deposition Of Models With Modelled Eve Bound Ligands) -- Crystal Structure Of Nudt5 In Complex Wit Z2856434778
authors	Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.B Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delf
compound		source
Molecule: Adp-Sugar Pyrophosphatase Chain: A, B, C, D Synonym: 8-Oxo-Dgdp Phosphatase,Nuclear Atp-Synthesis Prote Nucleoside Diphosphate-Linked Moiety X Motif 5,Hnudt5,Ysa1h Ec: 3.6.1.13,3.6.1.58,2.7.7.96 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nudt5, Nudix5, Hspc115 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.220 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.520 59.520 80.620 79.68 82.36 76.36
method	X-Ray Diffraction	resolution	1.73 Å
ligand	CL, EDO, K2P, MG	enzyme	Hydrolase E.C.3.6.1.13 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (5qjx.pdb1.gz) 63 Kb Biological Unit Coordinates (5qjx.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 5QJX CSU: Contacts of Structural Units for 5QJX Structure Factors (4134 Kb) Retrieve 5QJX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5QJX from S2C, [Save to disk]

View 5QJX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5QJX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5qjx_D] [5qjx_C] [5qjx_B] [5qjx_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5QJX

Community annotation for 5QJX at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---