5QRK Transcription date May 25, 2019
title Pandda Analysis Group Deposition -- Crystal Structure Of Hum Brachyury In Complex With Z275179758
authors J.A.Newman, A.E.Gavard, A.Fernandez-Cid, L.Sherestha, N.A.Burges F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi
compound source
Molecule: T-Box Transcription Factor T
Chain: A
Synonym: Brachyury Protein,Protein T
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbxt, T
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.225 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.154 60.154 110.478 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand CD, NWV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5qrk.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 5QRK
  • CSU: Contacts of Structural Units for 5QRK
  • Structure Factors (3192 Kb)
  • Retrieve 5QRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QRK from S2C, [Save to disk]
    • View 5QRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5QRK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qrk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5QRK
  • Community annotation for 5QRK at PDBWiki (http://pdbwiki.org)

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