5R52 Hydrolase date Feb 28, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Hum In Complex With N14004a
authors L.Diaz-Saez, R.Talon, T.Krojer, N.A.Burgess-Brown, C.H.Arrowsmit A.M.Edwards, C.Bountra, F.Von Delft, K.V.M.Huber
compound source
Molecule: Uridine Diphosphate Glucose Pyrophosphatase Nudt2
Chain: A
Synonym: Ugppase,Nucleoside Diphosphate-Linked Moiety X Mot Nudix Motif 22;
Ec: 3.6.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt22, Pp11246
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.570 52.370 101.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand DMS, GQJ enzyme Hydrolase E.C.3.6.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5r52.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5R52
  • CSU: Contacts of Structural Units for 5R52
  • Structure Factors (3348 Kb)
  • Retrieve 5R52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5R52 from S2C, [Save to disk]
  • View 5R52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5R52
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5r52_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5R52
  • Community annotation for 5R52 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science