5R8T Hydrolase date Mar 25, 2020
title Pandda Analysis Group Deposition Of Ground-State Model Of Sa Main Protease Screened Against Dsi Poised (Enamine), Fragli Peplites (Newcastle University), Mini Frags (Astex), York 3 University), Electrophile Cysteine Covalent (Weizman Instit Fragment Libraries
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Vo
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: Sars-Cov-2 Main Protease,3cl-Pro,3clp,Main Proteas Non-Structural Protein 5,Nsp5,Sars Coronavirus Main Protein
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.207 52.596 44.631 90.00 102.99 90.00
method X-Ray Diffractionresolution 1.27 Å
ligand DMS enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5r8t.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 5R8T
  • CSU: Contacts of Structural Units for 5R8T
  • Structure Factors (741082 Kb)
  • Retrieve 5R8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5R8T from S2C, [Save to disk]
  • View 5R8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5R8T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5r8t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5R8T
  • Community annotation for 5R8T at PDBWiki (http://pdbwiki.org)

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