5RF5 Hydrolase Hydrolase Inhibitor date Mar 15, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Sar Main Protease In Complex With Z3241250482
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Vo
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: Sars-Cov-2 Main Protease,3cl-Pro,3clp,Main Proteas Non-Structural Protein 5,Nsp5,Sars Coronavirus Main Protein
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.225 52.701 44.634 90.00 102.89 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand DMS, HV2 enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5rf5.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5RF5
  • CSU: Contacts of Structural Units for 5RF5
  • Structure Factors (1971 Kb)
  • Retrieve 5RF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RF5 from S2C, [Save to disk]
    • View 5RF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RF5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rf5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RF5
  • Community annotation for 5RF5 at PDBWiki (http://pdbwiki.org)

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