5RFE Hydrolase Hydrolase Inhibitor date Mar 15, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Sar Main Protease In Complex With Z509756472
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Vo
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: Sars-Cov-2 Main Protease,3cl-Pro,3clp,Main Proteas Non-Structural Protein 5,Nsp5,Sars Coronavirus Main Protein
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.593 52.934 44.458 90.00 102.96 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand DMS, JGG enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5rfe.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5RFE
  • CSU: Contacts of Structural Units for 5RFE
  • Structure Factors (3281 Kb)
  • Retrieve 5RFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RFE from S2C, [Save to disk]
    • View 5RFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RFE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rfe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RFE
  • Community annotation for 5RFE at PDBWiki (http://pdbwiki.org)

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