5RFX Hydrolase Hydrolase Inhibitor date Mar 15, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Sar Main Protease In Complex With Pcm-0102254
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Vo
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: Sars-Cov-2 Main Protease,3cl-Pro,3clp,Main Proteas Non-Structural Protein 5,Nsp5,Sars Coronavirus Main Protein
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.803 52.599 44.686 90.00 102.94 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand DMS, T8P enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5rfx.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5RFX
  • CSU: Contacts of Structural Units for 5RFX
  • Structure Factors (2723 Kb)
  • Retrieve 5RFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RFX from S2C, [Save to disk]
  • View 5RFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5RFX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rfx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5RFX
  • Community annotation for 5RFX at PDBWiki (http://pdbwiki.org)

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