5RGX PanDDA analysis group deposition SARS-CoV-2 main protease fragment screen -- Crystal Structure of SARS-CoV-2 main protease in complex with Z1344037997 (Mpro-x2572) date
authors Aimon A, Brandao-Neto J, Carbery A, Douangamath A, Dunnett L, Fearon D, Gehrtz P, Krojer T, London N, Lukacik P, Owen CD, Powell AJ, Resnick E, Skyner R, Snee M, Strain-Damerell CM, Walsh MA, Wild C, von Delft F
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DMS, UGP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5rgx.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 5RGX
  • CSU: Contacts of Structural Units for 5RGX
  • Structure Factors (2251 Kb)
  • Retrieve 5RGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RGX from S2C, [Save to disk]
    • View 5RGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RGX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5rgx from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rgx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RGX
  • Community annotation for 5RGX at PDBWiki (http://pdbwiki.org)

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