5RHD Hydrolase Hydrolase Inhibitor date May 16, 2020
title Pandda Analysis Group Deposition Sars-Cov-2 Main Protease Fr Screen -- Crystal Structure Of Sars-Cov-2 Main Protease In With Sf013 (Mpro-X2193)
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, A.Keeley, G.M.Keseru, N.L M.A.Walsh, F.Von Delft
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: Sars-Cov-2 Main Protease, 3cl-Pro, 3clp
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.679 52.873 44.557 90.00 103.06 90.00
method X-Ray Diffractionresolution 1.57 Å
ligand DMS, US7 enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5rhd.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5RHD
  • CSU: Contacts of Structural Units for 5RHD
  • Structure Factors (2849 Kb)
  • Retrieve 5RHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RHD from S2C, [Save to disk]
  • View 5RHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5RHD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rhd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5RHD
  • Community annotation for 5RHD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science