5RHE Hydrolase Hydrolase Inhibitor date May 16, 2020
title Pandda Analysis Group Deposition Sars-Cov-2 Main Protease Fr Screen -- Crystal Structure Of Sars-Cov-2 Main Protease In With Pg-Cov-42 (Mpro-X2052)
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Vo
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: 3cl-Pro, 3clp
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.179 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.943 52.872 44.546 90.00 103.06 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand DMS, UPD enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (5rhe.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5RHE
  • CSU: Contacts of Structural Units for 5RHE
  • Structure Factors (3016 Kb)
  • Retrieve 5RHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RHE from S2C, [Save to disk]
    • View 5RHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rhe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RHE
  • Community annotation for 5RHE at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science