5RK4 Protein Binding date Jun 02, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Phi Complex With Z56791867
authors H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoe C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin
compound source
Molecule: Ph-Interacting Protein
Chain: A
Synonym: Phip,Ddb1- And Cul4-Associated Factor 14,Irs-1 Ph Binding Protein,Wd Repeat-Containing Protein 11;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phip, Dcaf14, Wdr11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.598 27.322 55.985 90.00 99.96 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand K1S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5rk4.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5RK4
  • CSU: Contacts of Structural Units for 5RK4
  • Structure Factors (2359 Kb)
  • Retrieve 5RK4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RK4 from S2C, [Save to disk]
    • View 5RK4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RK4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rk4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RK4
  • Community annotation for 5RK4 at PDBWiki (http://pdbwiki.org)

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