5RL0 Hydrolase Hydrolase Inhibitor date Aug 05, 2020
title Pandda Analysis Group Deposition Of Computational Designs Of Main Protease Covalent Inhibitors -- Crystal Structure Of Main Protease In Complex With Lon-Wei-Adc59df6-2 (Mpro-X3
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, D.Zaidman, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, T.J.Gorrie-Stone, R.Skyner, N.London, M.A. F.Von Delft
compound source
Molecule: 3c-Like Proteinase
Chain: A
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.561 52.771 44.375 90.00 102.97 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand DMS, VEG enzyme Hydrolase E.C.3.4.22.69 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5rl0.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 5RL0
  • CSU: Contacts of Structural Units for 5RL0
  • Structure Factors (1447 Kb)
  • Retrieve 5RL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RL0 from S2C, [Save to disk]
    • View 5RL0 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RL0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rl0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RL0
  • Community annotation for 5RL0 at PDBWiki (http://pdbwiki.org)

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