5SVA		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym... B RNA-directed 5'-3' RNA polym... C RNA-directed 5'-3' RNA polym... D RNA-directed 5'-3' RNA polym... E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... G RNA-directed 5'-3' RNA polym... H RNA-directed 5'-3' RNA polym... I RNA-directed 5'-3' RNA polym... J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K RNA-directed 5'-3' RNA polym... L RNA-directed 5'-3' RNA polym... M N O P transcription factor activit... Q R S T U V W X Y Z a ATPase activator activity b holo TFIIH complex c d transcription cofactor activ... e f transcription factor TFIIF c... g transcription factor TFIIF c... h i j k n transcription factor TFIID c... transcription factor TFIIF c... SWI/SNF complex Ino80 complex
Primary reference	Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex., Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD, Cell. 2016 Sep 8;166(6):1411-1422.e16. doi: 10.1016/j.cell.2016.08.050. PMID:27610567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1213 Kb) [Save to disk] Biological Unit Coordinates (5sva.pdb1.gz) 1181 Kb LPC: Ligand-Protein Contacts for 5SVA CSU: Contacts of Structural Units for 5SVA Retrieve 5SVA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SVA from S2C, [Save to disk]

View 5SVA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sva] [5sva_A] [5sva_B] [5sva_C] [5sva_D] [5sva_E] [5sva_F] [5sva_G] [5sva_H] [5sva_I] [5sva_J] [5sva_K] [5sva_L] [5sva_M] [5sva_N] [5sva_O] [5sva_P] [5sva_Q] [5sva_R] [5sva_S] [5sva_T] [5sva_U] [5sva_V] [5sva_W] [5sva_X] [5sva_Y] [5sva_Z] [5sva_a] [5sva_b] [5sva_c] [5sva_d] [5sva_e] [5sva_f] [5sva_g] [5sva_h] [5sva_i] [5sva_j] [5sva_k] [5sva_l] [5sva_m] [5sva_n] SWISS-PROT database: Domains found in 5SVA: [BAG] [CYCLIN] [DEXDc] [DEXDc2] [HELICc] [HELICc2] [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [S1] [TFIIA] [TFIIE] [Tbf5] [ZnF_C2C2 ] by SMART

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