5SXN	Hydrolase Hydrolase Inhibitor	date	Aug 09, 2016
title	Structure-Based Design Of A New Series Of N-Piperidin-3-Ylpy 5-Carboxamides As Renin Inhibitors
authors	G.P.Snell, C.A.Behnke, K.Okada, O.Hideyuki, B.C.Sang, W.Lane
compound		source
Molecule: Renin Chain: A, B Synonym: Angiotensinogenase Ec: 3.4.23.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ren Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
symmetry	Space Group: P 21 3	R_factor 0.195 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.106 140.106 140.106 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	74U, NAG, PEG, PGE	enzyme	Hydrolase E.C.3.4.23.15 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors., Imaeda Y, Tawada M, Suzuki S, Tomimoto M, Kondo M, Tarui N, Sanada T, Kanagawa R, Snell G, Behnke CA, Kubo K, Kuroita T, Bioorg Med Chem. 2016 Nov 15;24(22):5771-5780. doi: 10.1016/j.bmc.2016.09.030., Epub 2016 Sep 13. PMID:27687967

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (5sxn.pdb1.gz) 113 Kb Biological Unit Coordinates (5sxn.pdb2.gz) 112 Kb Biological Unit Coordinates (5sxn.pdb3.gz) 661 Kb LPC: Ligand-Protein Contacts for 5SXN CSU: Contacts of Structural Units for 5SXN Structure Factors (943 Kb) Retrieve 5SXN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SXN from S2C, [Save to disk] Re-refined 5sxn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SXN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SXN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sxn_A] [5sxn_B] [5sxn] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5SXN at PDBWiki (http://pdbwiki.org)

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