5SYM	Hydrolase Hydrolase Inhibitor	date	Aug 11, 2016
title	Cocrystal Structure Of The Human Acyl Protein Thioesterase 1 Isoform-Selective Inhibitor, Ml348
authors	J.A.Stuckey, K.J.Labby, J.L.Meagher, S.J.Won, B.R.Martin
compound		source
Molecule: Acyl-Protein Thioesterase 1 Chain: A, B Synonym: Hapt1,Lysophospholipase 1,Lysophospholipase I,Lyso Ec: 3.1.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lypla1, Apt1, Lpl1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 2 21 21	R_factor 0.179 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.670 73.690 81.820 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	71Q, CL, EDO	enzyme	Hydrolase E.C.3.1.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2)., Won SJ, Davda D, Labby KJ, Hwang SY, Pricer R, Majmudar JD, Armacost KA, Rodriguez LA, Rodriguez CL, Chong FS, Torossian KA, Palakurthi J, Hur ES, Meagher JL, Brooks CL 3rd, Stuckey JA, Martin BR, ACS Chem Biol. 2016 Oct 31. PMID:27748579

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk] Biological Unit Coordinates (5sym.pdb1.gz) 141 Kb Biological Unit Coordinates (5sym.pdb2.gz) 140 Kb LPC: Ligand-Protein Contacts for 5SYM CSU: Contacts of Structural Units for 5SYM Structure Factors (1777 Kb) Retrieve 5SYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SYM from S2C, [Save to disk] Re-refined 5sym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sym_A] [5sym_B] [5sym] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5SYM

Community annotation for 5SYM at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---