OCA Atlas for 5SZD

5SZD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, GAI, MPD, MRD, PEG

enzyme

Gene

AQ ; AQ

Gene
Ontology

Chain	Function	Process	Component
K, I, B, L, D, F, E, G, A, J, H, C

Primary reference

Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode., Stanek KA, Patterson-West J, Randolph PS, Mura C, Acta Crystallogr D Struct Biol. 2017 Apr 1;73(Pt 4):294-315. doi:, 10.1107/S2059798317000031. Epub 2017 Mar 31. PMID:28375142

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]

Biological Unit Coordinates (5szd.pdb1.gz) 161 Kb

Biological Unit Coordinates (5szd.pdb2.gz) 166 Kb

Biological Unit Coordinates (5szd.pdb3.gz) 324 Kb

LPC: Ligand-Protein Contacts for 5SZD

CSU: Contacts of Structural Units for 5SZD

Structure Factors (2586 Kb)

Retrieve 5SZD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5SZD from S2C, [Save to disk]

Re-refined 5szd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SZD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5szd] [5szd_A] [5szd_B] [5szd_C] [5szd_D] [5szd_E] [5szd_F] [5szd_G] [5szd_H] [5szd_I] [5szd_J] [5szd_K] [5szd_L]

SWISS-PROT database:

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