5SZG Endocytosis date Aug 14, 2016
title Structure Of The Bmerb Domain Of Mical-3
authors A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, E.M M.P.Mueller
compound source
Molecule: Protein-Methionine Sulfoxide Oxidase Mical3
Chain: A, B
Fragment: Unp Residues 1841-1990
Synonym: Molecule Interacting With Casl Protein 3,Mical-3
Ec: 1.14.13.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mical3, Kiaa0819, Kiaa1364
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.251 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.858 78.848 95.557 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE, PEG enzyme Oxidoreductase E.C.1.14.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencebMERB domains are bivalent Rab8 family effectors evolved by gene duplication., Rai A, Oprisko A, Campos J, Fu Y, Friese T, Itzen A, Goody RS, Gazdag EM, Muller MP, Elife. 2016 Aug 23;5. pii: e18675. doi: 10.7554/eLife.18675. PMID:27552051
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5szg.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5SZG
  • CSU: Contacts of Structural Units for 5SZG
  • Structure Factors (211 Kb)
  • Retrieve 5SZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SZG from S2C, [Save to disk]
  • Re-refined 5szg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5SZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5SZG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5szg_B] [5szg_A] [5szg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5SZG: [DUF3585 ] by SMART
    • Other resources with information on 5SZG
  • Community annotation for 5SZG at PDBWiki (http://pdbwiki.org)

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