5SZI	Endocytosis	date	Aug 14, 2016
title	Structure Of Human Rab8a In Complex With The Bmerb Domain Of
authors	A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, M.P E.M.Gazdag
compound		source
Molecule: Ras-Related Protein Rab-8a Chain: A Synonym: Oncogene C-Mel Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab8a, Mel, Rab8 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Mical C-Terminal-Like Protein Chain: B Synonym: Erk2-Binding Testicular Protein 1,Ebitein-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Micalcl Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.237 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.400 122.400 139.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	GNP, MG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	bMERB domains are bivalent Rab8 family effectors evolved by gene duplication., Rai A, Oprisko A, Campos J, Fu Y, Friese T, Itzen A, Goody RS, Gazdag EM, Muller MP, Elife. 2016 Aug 23;5. pii: e18675. doi: 10.7554/eLife.18675. PMID:27552051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (5szi.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 5SZI CSU: Contacts of Structural Units for 5SZI Structure Factors (111 Kb) Retrieve 5SZI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SZI from S2C, [Save to disk] Re-refined 5szi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SZI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SZI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5szi_A] [5szi] [5szi_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5SZI: [DUF3585] [RAB ] by SMART

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