5SZT	Transferase	date	Aug 15, 2016
title	Crystal Structure Of The Large Fragment Of Dna Polymerase I Thermus Aquaticus In A Closed Ternary Complex With 7-(N-(10 Hydroxydecanoyl)-Aminopentenyl)-7-Deaza-2'-Datp
authors	A.Hottin, K.Betz, A.Marx
compound		source
Molecule: Dna Polymerase I, Thermostable Chain: A Synonym: Taq Polymerase 1 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Thermus Aquaticus Organism_taxid: 271 Gene: Pola, Pol1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gpapcpcpapcpgpgpcpgpcp(Doc) Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Apapaptpgpgpcpgpcpcpgptpgp 3'); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 31 2 1	R_factor 0.194 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.425 108.425 90.615 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	72J, ACT, DOC, GOL, MG	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the KlenTaq DNA Polymerase catalyzed Incorporation of Alkene- versus Alkyne-modified Nucleotides., Marx A, Hottin A, Betz K, Diederichs K, Chemistry. 2016 Nov 30. doi: 10.1002/chem.201604515. PMID:27901305

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk] Biological Unit Coordinates (5szt.pdb1.gz) 302 Kb LPC: Ligand-Protein Contacts for 5SZT CSU: Contacts of Structural Units for 5SZT Structure Factors (580 Kb) Retrieve 5SZT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SZT from S2C, [Save to disk] Re-refined 5szt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5SZT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5szt_B] [5szt] [5szt_C] [5szt_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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