5T00	Transcription Regulator Dna	date	Aug 15, 2016
title	Human Ctcf Znf3-7 And Methylated Dna Complex
authors	H.Hashimoto, D.Wang, X.Cheng
compound		source
Molecule: Transcriptional Repressor Ctcf Chain: A, D Fragment: Unp Residues 321-465 Synonym: 11-Zinc Finger Protein,Ccctc-Binding Factor,Ctcfl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ctcf Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Codon Plus Expression_system_vector_type: Pgex6p-1 Expression_system_plasmid: Pxc1551
Molecule: Dna (5'-Tag(5cm)Gccccctgctggc-3') Chain: B, E Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-Gccagcaggggg(5cm)Gcta-3') Chain: C, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor 0.218 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.990 44.910 86.800 98.33 92.40 94.80
method	X-Ray Diffraction	resolution	2.19 Å
ligand	5CM, ZN	enzyme
Primary reference	Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA., Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X, Mol Cell. 2017 Jun 1;66(5):711-720.e3. doi: 10.1016/j.molcel.2017.05.004. Epub, 2017 May 18. PMID:28529057

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk] Biological Unit Coordinates (5t00.pdb1.gz) 109 Kb Biological Unit Coordinates (5t00.pdb2.gz) 110 Kb LPC: Ligand-Protein Contacts for 5T00 CSU: Contacts of Structural Units for 5T00 Structure Factors (650 Kb) Retrieve 5T00 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5T00 from S2C, [Save to disk] Re-refined 5t00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5T00 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5T00

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5t00_E] [5t00_D] [5t00] [5t00_C] [5t00_F] [5t00_B] [5t00_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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