5T0I Hydrolase date Aug 16, 2016
title Structural Basis For Dynamic Regulation Of The Human 26s Pro
authors S.Chen, J.Wu, Y.Lu, Y.B.Ma, B.H.Lee, Z.Yu, Q.Ouyang, D.Finley, M.W.K Y.Mao
compound source
Molecule: 26s Protease Regulatory Subunit 7
Chain: A
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt1,Proteasome Subunit Atpase 2,Protein Mss1;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 4
Chain: B
Synonym: P26s4,26s Proteasome Aaa-Atpase Subunit Rpt2,Prote Subunit Atpase 1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 8
Chain: C
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt6,Proteasome Subunit Atpase 5,Proteasome Subunit P45,Thyroid Hormone Rec Interacting Protein 1,Trip1,P45sug;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6b
Chain: D
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt3,Mb67-Intera Protein,Mip224,Proteasome 26s Subunit Atpase 4,Tat-Binding Tbp-7;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 10b
Chain: E

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6a
Chain: F
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt5,Proteasome Subunit Atpase 3,Proteasome Subunit P50,Tat-Binding Protein

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-6
Chain: G
Synonym: 27 Kda Prosomal Protein,P27k,Macropain Iota Chain, Multicatalytic Endopeptidase Complex Iota Chain,Proteasome Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-2
Chain: H
Synonym: Macropain Subunit C3,Multicatalytic Endopeptidase Subunit C3,Proteasome Component C3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-4
Chain: I
Synonym: Macropain Subunit C9,Multicatalytic Endopeptidase Subunit C9,Proteasome Component C9,Proteasome Subunit L;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-7
Chain: J
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-5
Chain: K
Synonym: Macropain Zeta Chain,Multicatalytic Endopeptidase Zeta Chain,Proteasome Zeta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-1
Chain: L
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-3
Chain: M
Synonym: Macropain Subunit C8,Multicatalytic Endopeptidase Subunit C8,Proteasome Component C8;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-6
Chain: N
Synonym: Macropain Delta Chain,Multicatalytic Endopeptidase Delta Chain,Proteasome Delta Chain,Proteasome Subunit Y;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-7
Chain: O
Synonym: Macropain Chain Z,Multicatalytic Endopeptidase Com Z,Proteasome Subunit Z;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-3
Chain: P
Synonym: Proteasome Chain 13,Proteasome Component C10-II,Pr Theta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-2
Chain: Q
Synonym: Macropain Subunit C7-I,Multicatalytic Endopeptidas Subunit C7-I,Proteasome Component C7-I;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-5
Chain: R
Synonym: Macropain Epsilon Chain,Multicatalytic Endopeptida Epsilon Chain,Proteasome Chain 6,Proteasome Epsilon Chain,P Subunit Mb1,Proteasome Subunit X;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-1
Chain: S
Synonym: Macropain Subunit C5,Multicatalytic Endopeptidase Subunit C5,Proteasome Component C5,Proteasome Gamma Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-4
Chain: T
Synonym: 26 Kda Prosomal Protein,Pros-26,Macropain Beta Cha Multicatalytic Endopeptidase Complex Beta Chain,Proteasome Chain,Proteasome Chain 3,Hsn3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 1
Chain: U
Synonym: 26s Proteasome Regulatory Subunit Rpn2,26s Proteas Regulatory Subunit S1,26s Proteasome Subunit P112;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 3
Chain: V
Synonym: 26s Proteasome Regulatory Subunit Rpn3,26s Proteas Regulatory Subunit S3,Proteasome Subunit P58;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 12
Chain: W
Synonym: 26s Proteasome Regulatory Subunit Rpn5,26s Proteas Regulatory Subunit P55;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 11
Chain: X
Synonym: 26s Proteasome Regulatory Subunit Rpn6,26s Proteas Regulatory Subunit S9,26s Proteasome Regulatory Subunit P44

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 6
Chain: Y
Synonym: 26s Proteasome Regulatory Subunit Rpn7,26s Proteas Regulatory Subunit S10,Breast Cancer-Associated Protein Sga Phosphonoformate Immuno-Associated Protein 4,Proteasome Reg Particle Subunit P44s10,P42a;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 7
Chain: Z
Synonym: 26s Proteasome Regulatory Subunit Rpn8,26s Proteas Regulatory Subunit S12,Mov34 Protein Homolog,Proteasome Sub

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 13
Chain: a
Synonym: 26s Proteasome Regulatory Subunit Rpn9,26s Proteas Regulatory Subunit S11,26s Proteasome Regulatory Subunit P4

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 4
Chain: b
Synonym: 26s Proteasome Regulatory Subunit Rpn10,26s Protea Regulatory Subunit S5a,Antisecretory Factor 1,Asf,Multiubiq Chain-Binding Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 14
Chain: c
Synonym: 26s Proteasome Regulatory Subunit Rpn11,26s Protea Associated Pad1 Homolog 1;
Ec: 3.4.19.-

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 8
Chain: d
Synonym: 26s Proteasome Regulatory Subunit Rpn12,26s Protea Regulatory Subunit S14,P31;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Complex Subunit Dss1
Chain: e
Synonym: Deleted In Split Handsplit Foot Protein 1,Split H Deleted Protein 1,Split Handfoot Malformation Type 1 Prote

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 2
Chain: f
Synonym: 26s Proteasome Regulatory Subunit Rpn1,26s Proteas Regulatory Subunit S2,26s Proteasome Subunit P97,Protein 55 Necrosis Factor Type 1 Receptor-Associated Protein 2

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
ligand ATP, ZN enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • proteasome-activating ATPase...


  • B
  • proteasome-activating ATPase...


  • C
  • proteasome-activating ATPase...


  • D
  • proteasome-activating ATPase...


  • E
  • proteasome-activating ATPase...

  • proteasome complex
  • F
  • proteasome-activating ATPase...


  • G
  • positive regulation of NF-ka...

  • H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    a


    b


    c
  • endopeptidase activator acti...


  • d


    e


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3244 Kb) [Save to disk]
  • Biological Unit Coordinates (5t0i.pdb1.gz) 3227 Kb
  • LPC: Ligand-Protein Contacts for 5T0I
  • CSU: Contacts of Structural Units for 5T0I
  • Retrieve 5T0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T0I from S2C, [Save to disk]
  • View 5T0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T0I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5t0i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t0i_J] [5t0i_X] [5t0i_E] [5t0i_R] [5t0i_C] [5t0i_B] [5t0i_N] [5t0i_K] [5t0i_b] [5t0i_a] [5t0i_c] [5t0i_A] [5t0i_D] [5t0i_S] [5t0i_Y] [5t0i_O] [5t0i_W] [5t0i] [5t0i_L] [5t0i_P] [5t0i_Z] [5t0i_d] [5t0i_M] [5t0i_U] [5t0i_F] [5t0i_e] [5t0i_f] [5t0i_V] [5t0i_T] [5t0i_Q] [5t0i_G] [5t0i_H] [5t0i_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5T0I: [AAA] [DSS1_SEM1] [JAB_MPN] [PAM] [PINT] [Proteasome_A_N] [UIM] [VWA ] by SMART
  • Other resources with information on 5T0I
  • Community annotation for 5T0I at PDBWiki (http://pdbwiki.org)

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