5T2Q Immune System date Aug 24, 2016
title Unliganded Human Hvem At 1.9a In P 1 21 1
authors I.Nemcovicova, D.M.Zajonc
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A, B
Synonym: Herpes Virus Entry Mediator A,Hvea,Tumor Necrosis Receptor-Like 2,Tr2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf14, Hvea, Hvem, Unq329pro509
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_plasmid: Pac
symmetry Space Group: P 1 21 1
R_factor 0.252 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.190 47.510 67.290 90.00 106.69 90.00
method X-Ray Diffractionresolution 1.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (5t2q.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (5t2q.pdb2.gz) 17 Kb
  • CSU: Contacts of Structural Units for 5T2Q
  • Structure Factors (518 Kb)
  • Retrieve 5T2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T2Q from S2C, [Save to disk]
    • View 5T2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T2Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t2q_A] [5t2q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T2Q
  • Community annotation for 5T2Q at PDBWiki (http://pdbwiki.org)

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