5T3A Hydrolase date Aug 25, 2016
title Maedi-Visna Virus (Mvv) Integrase Ccd-Ctd (Residues 60-275)
authors N.J.Cook, V.E.Pye, P.Cherepanov
compound source
Molecule: Integrase
Chain: A
Engineered: Yes
 Organism_scientific: Visnamaedi Virus
Organism_common: Mvv
Organism_taxid: 11741
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.179 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.050 124.830 62.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACT, MES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA supramolecular assembly mediates lentiviral DNA integration., Ballandras-Colas A, Maskell DP, Serrao E, Locke J, Swuec P, Jonsson SR, Kotecha A, Cook NJ, Pye VE, Taylor IA, Andresdottir V, Engelman AN, Costa A, Cherepanov P, Science. 2017 Jan 6;355(6320):93-95. doi: 10.1126/science.aah7002. PMID:28059770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3a.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 5T3A
  • CSU: Contacts of Structural Units for 5T3A
  • Structure Factors (219 Kb)
  • Retrieve 5T3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3A from S2C, [Save to disk]
  • Re-refined 5t3a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T3A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3a] [5t3a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T3A
  • Community annotation for 5T3A at PDBWiki (http://pdbwiki.org)

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