5T3S date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


G


Primary referenceHIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies., Steichen JM, Kulp DW, Tokatlian T, Escolano A, Dosenovic P, Stanfield RL, McCoy LE, Ozorowski G, Hu X, Kalyuzhniy O, Briney B, Schiffner T, Garces F, Freund NT, Gitlin AD, Menis S, Georgeson E, Kubitz M, Adachi Y, Jones M, Mutafyan AA, Yun DS, Mayer CT, Ward AB, Burton DR, Wilson IA, Irvine DJ, Nussenzweig MC, Schief WR, Immunity. 2016 Sep 20;45(3):483-96. doi: 10.1016/j.immuni.2016.08.016. Epub 2016 , Sep 8. PMID:27617678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (506 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3s.pdb1.gz) 1471 Kb
  • LPC: Ligand-Protein Contacts for 5T3S
  • CSU: Contacts of Structural Units for 5T3S
  • Structure Factors (241 Kb)
  • Retrieve 5T3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3S from S2C, [Save to disk]
  • Re-refined 5t3s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3s] [5t3s_B] [5t3s_D] [5t3s_E] [5t3s_G] [5t3s_H] [5t3s_L]
  • SWISS-PROT database:
  • Domains found in 5T3S: [IG_like] [IGv ] by SMART

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