5T4L Transferase date Aug 29, 2016
title Plp And Gaba Trigger Gabr-Mediated Transcription Regulation Bacillus Subsidies Via External Aldimine Formation
authors R.Wu, R.Sanishvili, B.R.Belitsky, J.I.Juncosa, H.V.Le, H.J.S.Lehr M.Farley, R.B.Silverman, G.A.Petsko, D.Ringe, D.Liu
compound source
Molecule: Aspartate Aminotransferase
Chain: A
Synonym: Aspat,Transaminase A
Ec: 2.6.1.1
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.149 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.913 154.916 79.342 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand 77E enzyme Transferase E.C.2.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation., Wu R, Sanishvili R, Belitsky BR, Juncosa JI, Le HV, Lehrer HJ, Farley M, Silverman RB, Petsko GA, Ringe D, Liu D, Proc Natl Acad Sci U S A. 2017 Mar 27. pii: 201703019. doi:, 10.1073/pnas.1703019114. PMID:28348215
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5t4l.pdb1.gz) 304 Kb
  • LPC: Ligand-Protein Contacts for 5T4L
  • CSU: Contacts of Structural Units for 5T4L
  • Structure Factors (1520 Kb)
  • Retrieve 5T4L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T4L from S2C, [Save to disk]
  • Re-refined 5t4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T4L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T4L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t4l] [5t4l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T4L
  • Community annotation for 5T4L at PDBWiki (http://pdbwiki.org)

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