5T4S Hydrolase Hydrolase Inhibitor date Aug 30, 2016
title Novel Approach Of Fragment-Based Lead Discovery Applied To R Inhibitors
authors G.P.Snell, C.A.Behnke, K.Okada, H.Oki, B.C.Sang, W.Lane
compound source
Molecule: Renin
Chain: A, B
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
symmetry Space Group: P 21 3
R_factor 0.205 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.927 139.927 139.927 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand 77O, DMS, NAG, PG6, PGE enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel approach of fragment-based lead discovery applied to renin inhibitors., Tawada M, Suzuki S, Imaeda Y, Oki H, Snell G, Behnke CA, Kondo M, Tarui N, Tanaka T, Kuroita T, Tomimoto M, Bioorg Med Chem. 2016 Nov 15;24(22):6066-6074. doi: 10.1016/j.bmc.2016.09.065., Epub 2016 Sep 28. PMID:27720325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (5t4s.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (5t4s.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (5t4s.pdb3.gz) 632 Kb
  • LPC: Ligand-Protein Contacts for 5T4S
  • CSU: Contacts of Structural Units for 5T4S
  • Structure Factors (739 Kb)
  • Retrieve 5T4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T4S from S2C, [Save to disk]
  • Re-refined 5t4s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T4S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5t4s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t4s] [5t4s_B] [5t4s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T4S
  • Community annotation for 5T4S at PDBWiki (http://pdbwiki.org)

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