5T6I Transferase date Sep 01, 2016
title Crystal Structure Of Tgcdpk1 From Toxoplasma Gondii Complexe
authors D.Q.Jiang, W.Tempel, J.R.Walker, M.El Bakkouri, P.Loppnau, S.Gras C.H.Arrowsmith, A.M.Edwards, C.Bountra, R.Hui, D.V.Lovato, K.T.O Structural Genomics Consortium (Sgc)
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Engineered: Yes
 Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Cdpk1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15_mhl
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.069 72.485 66.001 90.00 97.42 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand 5GB enzyme
note 5T6I supersedes 5DVT
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (5t6i.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5T6I
  • CSU: Contacts of Structural Units for 5T6I
  • Structure Factors (788 Kb)
  • Retrieve 5T6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T6I from S2C, [Save to disk]
  • Re-refined 5t6i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T6I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t6i] [5t6i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5T6I: [EFh] [S_TKc ] by SMART
    • Other resources with information on 5T6I
  • Community annotation for 5T6I at PDBWiki (http://pdbwiki.org)

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