5T6K Transferase date Sep 01, 2016
title Crystal Structure Of Tgcdpk1 From Toxoplasma Gondii Complexe Gw780159x
authors D.Q.Jiang, W.Tempel, J.R.Walker, M.El Bakkouri, P.Loppnau, S.Gras C.H.Arrowsmith, A.M.Edwards, C.Bountra, R.Hui, D.V.Lovato, K.T.O Structural Genomics Consortium (Sgc)
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Engineered: Yes
 Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Cdpk1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15_mhl
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.960 72.456 65.671 90.00 98.22 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 5G9, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5t6k.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5T6K
  • CSU: Contacts of Structural Units for 5T6K
  • Structure Factors (489 Kb)
  • Retrieve 5T6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T6K from S2C, [Save to disk]
  • Re-refined 5t6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T6K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t6k_A] [5t6k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5T6K: [EFh] [S_TKc ] by SMART
    • Other resources with information on 5T6K
  • Community annotation for 5T6K at PDBWiki (http://pdbwiki.org)

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