5T80 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 44E enzyme
Primary referenceLipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design., Irimia A, Serra AM, Sarkar A, Jacak R, Kalyuzhniy O, Sok D, Saye-Francisco KL, Schiffner T, Tingle R, Kubitz M, Adachi Y, Stanfield RL, Deller MC, Burton DR, Schief WR, Wilson IA, PLoS Pathog. 2017 Feb 22;13(2):e1006212. doi: 10.1371/journal.ppat.1006212., eCollection 2017 Feb. PMID:28225819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (5t80.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 5T80
  • CSU: Contacts of Structural Units for 5T80
  • Structure Factors (261 Kb)
  • Retrieve 5T80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T80 from S2C, [Save to disk]
  • Re-refined 5t80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t80] [5t80_G] [5t80_H] [5t80_L]
  • SWISS-PROT database:

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