5TBK Protein Transport Nuclear Protein date Sep 12, 2016
title Crystal Structure Of Human Importin A3 Bound To Rcc1
authors R.S.Sankhala, R.K.Lokareddy, R.A.Pumroy, G.Cingolani
compound source
Molecule: Importin Subunit Alpha-3
Chain: A, B, C, D, E, F, G, H
Synonym: Importin Alpha Q1,Qip1,Karyopherin Subunit Alpha-4
Engineered: Yes
Other_details: Functions In Nuclear Protein Import As An Ad Protein;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kpna4, Qip1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Regulator Of Chromosome Condensation
Chain: I, K, L, M, N, O, P, J
Synonym: Cell Cycle Regulatory Protein,Chromosome Condensat Protein 1;
Engineered: Yes
Other_details: Guanine-Nucleotide Releasing Factor That Pro Exchange Of Ran-Bound Gdp By Gtp.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rcc1, Chc1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 1
R_factor 0.278 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.403 162.494 161.592 75.65 85.63 72.17
method X-Ray Diffractionresolution 3.45 Å
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceThree-dimensional context rather than NLS amino acid sequence determines importin alpha subtype specificity for RCC1., Sankhala RS, Lokareddy RK, Begum S, Pumroy RA, Gillilan RE, Cingolani G, Nat Commun. 2017 Oct 17;8(1):979. doi: 10.1038/s41467-017-01057-7. PMID:29042532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2183 Kb) [Save to disk]
  • Biological Unit Coordinates (5tbk.pdb1.gz) 276 Kb
  • Biological Unit Coordinates (5tbk.pdb2.gz) 282 Kb
  • Biological Unit Coordinates (5tbk.pdb3.gz) 274 Kb
  • Biological Unit Coordinates (5tbk.pdb4.gz) 283 Kb
  • Biological Unit Coordinates (5tbk.pdb5.gz) 282 Kb
  • Biological Unit Coordinates (5tbk.pdb6.gz) 280 Kb
  • Biological Unit Coordinates (5tbk.pdb7.gz) 283 Kb
  • Biological Unit Coordinates (5tbk.pdb8.gz) 282 Kb
  • CSU: Contacts of Structural Units for 5TBK
  • Structure Factors (2145 Kb)
  • Retrieve 5TBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBK from S2C, [Save to disk]
  • View 5TBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TBK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbk_D] [5tbk_G] [5tbk_C] [5tbk_H] [5tbk_P] [5tbk_F] [5tbk_A] [5tbk_M] [5tbk_N] [5tbk_I] [5tbk_E] [5tbk_L] [5tbk_O] [5tbk_J] [5tbk_B] [5tbk_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TBK
  • Community annotation for 5TBK at PDBWiki (http://pdbwiki.org)

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