5TC4 Oxidoreductase date Sep 14, 2016
title Crystal Structure Of Human Mitochondrial Methylenetetrahydro Dehydrogenase-Cyclohydrolase (Mthfd2) In Complex With Ly345 Cofactors
authors R.Gustafsson, A.S.Jemth, N.Gustafsson Sheppard, K.Farnegardh, O E.Wiita, N.Bonagas, L.Dahllund, S.Llona-Minguez, M.Haggblad, M.Henriksson, Y.Andersson, E.Homan, T.Helleday, P.Stenmark
compound source
Molecule: Bifunctional Methylenetetrahydrofolate Dehydrogenasecyclohydrolase, Mitochondrial;
Chain: A
Fragment: Unp Residues 36-350
Ec: 1.5.1.15,3.5.4.9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mthfd2, Nmdmc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: I 4
R_factor 0.163 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.323 74.323 98.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand L34, NAD, PO4 enzyme Oxidoreductase E.C.1.5.1.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the emerging cancer target MTHFD2 in complex with a substrate-based inhibitor., Gustafsson R, Jemth AS, Gustafsson Sheppard N, Farnegardh K, Loseva O, Wiita E, Bonagas N, Dahllund L, Llona-Minguez S, Haggblad M, Henriksson M, Andersson Y, Homan E, Helleday T, Stenmark P, Cancer Res. 2016 Nov 29. pii: canres.1476.2016. PMID:27899380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5tc4.pdb1.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 5TC4
  • CSU: Contacts of Structural Units for 5TC4
  • Structure Factors (447 Kb)
  • Retrieve 5TC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TC4 from S2C, [Save to disk]
  • Re-refined 5tc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TC4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tc4] [5tc4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TC4
  • Community annotation for 5TC4 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science