OCA Atlas for 5TCP

5TCP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
I, 1, 3, 7, 5, M, C, f, O, d, j, Y, K, h, A, Q, E, U, W, G, l, b, 9, S
L, T, 4, F, Z, D, B, 8, X, N, c, k, a, g, 2, J, e, H, 0, P, R, 6, i, V

Primary reference

Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body., Worrall LJ, Hong C, Vuckovic M, Deng W, Bergeron JR, Majewski DD, Huang RK, Spreter T, Finlay BB, Yu Z, Strynadka NC, Nature. 2016 Dec 14. doi: 10.1038/nature20576. PMID:27974800

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1260 Kb) [Save to disk]

Biological Unit Coordinates (5tcp.pdb1.gz) 1246 Kb

CSU: Contacts of Structural Units for 5TCP

Retrieve 5TCP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5TCP from S2C, [Save to disk]

View 5TCP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tcp] [5tcp_0] [5tcp_1] [5tcp_2] [5tcp_3] [5tcp_4] [5tcp_5] [5tcp_6] [5tcp_7] [5tcp_8] [5tcp_9] [5tcp_A] [5tcp_B] [5tcp_C] [5tcp_D] [5tcp_E] [5tcp_F] [5tcp_G] [5tcp_H] [5tcp_I] [5tcp_J] [5tcp_K] [5tcp_L] [5tcp_M] [5tcp_N] [5tcp_O] [5tcp_P] [5tcp_Q] [5tcp_R] [5tcp_S] [5tcp_T] [5tcp_U] [5tcp_V] [5tcp_W] [5tcp_X] [5tcp_Y] [5tcp_Z] [5tcp_a] [5tcp_b] [5tcp_c] [5tcp_d] [5tcp_e] [5tcp_f] [5tcp_g] [5tcp_h] [5tcp_i] [5tcp_j] [5tcp_k] [5tcp_l]

SWISS-PROT database:

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