5TD5	Hydrolase Dna	date	Sep 16, 2016
title	Crystal Structure Of Human Apobec3b Variant Complexed With S
authors	K.Shi, S.Banerjee, K.Kurahashi, H.Aihara
compound		source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3b Chain: A Synonym: A3b,Phorbolin-1-Related Protein,Phorbolin-23 Ec: 3.5.4.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3b Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Ptptpcpapt)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 64 2 2	R_factor 0.180 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.411 96.411 84.875 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	CL, EDO, IOD, ZN	enzyme	Hydrolase E.C.3.5.4 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B., Shi K, Carpenter MA, Banerjee S, Shaban NM, Kurahashi K, Salamango DJ, McCann JL, Starrett GJ, Duffy JV, Demir O, Amaro RE, Harki DA, Harris RS, Aihara H, Nat Struct Mol Biol. 2016 Dec 19. doi: 10.1038/nsmb.3344. PMID:27991903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (5td5.pdb1.gz) 97 Kb LPC: Ligand-Protein Contacts for 5TD5 CSU: Contacts of Structural Units for 5TD5 Structure Factors (1629 Kb) Retrieve 5TD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TD5 from S2C, [Save to disk] Re-refined 5td5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5TD5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5td5_C] [5td5] [5td5_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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