5TDB	Ligase	date	Sep 19, 2016
title	Crystal Structure Of The Human Ubr-Box Domain From Ubr2 In C With Asymmetrically Double Methylated Arginine Peptide
authors	J.Munoz-Escobar, G.Kozlov, K.Gehring
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Ubr2 Chain: A Synonym: N-Recognin-2,Ubiquitin-Protein Ligase E3-Alpha-2,U Protein Ligase E3-Alpha-II; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubr2, C6orf133, Kiaa0349 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21
Molecule: Da2-Ile-Phe-Ser Peptide Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.125 R_Free 0.134
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.573 37.168 29.746 90.00 109.50 90.00
method	X-Ray Diffraction	resolution	1.10 Å
ligand	DA2, EDO, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Bound Waters Mediate Binding of Diverse Substrates to a Ubiquitin Ligase., Munoz-Escobar J, Matta-Camacho E, Cho C, Kozlov G, Gehring K, Structure. 2017 Mar 27. pii: S0969-2126(17)30064-3. doi:, 10.1016/j.str.2017.03.004. PMID:28392261

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (5tdb.pdb1.gz) 36 Kb LPC: Ligand-Protein Contacts for 5TDB CSU: Contacts of Structural Units for 5TDB Structure Factors (396 Kb) Retrieve 5TDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TDB from S2C, [Save to disk] Re-refined 5tdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tdb_B] [5tdb_A] [5tdb] SWISS-PROT database: Domain organization of by SWISSPFAM

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