5TEE Crystal structure of Gemin5 WD40 repeats in apo form date
authors Chao, X., Tempel, W., Bian, C., Cerovina, T., He, H., Walker, J.R., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.1945
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand GOL, NA, UNX enzyme
Primary referenceStructural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly., Xu C, Ishikawa H, Izumikawa K, Li L, He H, Nobe Y, Yamauchi Y, Shahjee HM, Wu XH, Yu YT, Isobe T, Takahashi N, Min J, Genes Dev. 2016 Nov 1;30(21):2376-2390. Epub 2016 Nov 10. PMID:27881600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (5tee.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 5TEE
  • CSU: Contacts of Structural Units for 5TEE
  • Structure Factors (10377 Kb)
  • Retrieve 5TEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TEE from S2C, [Save to disk]
  • Re-refined 5tee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tee_A] [5tee]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TEE: [WD40 ] by SMART
    • Other resources with information on 5TEE
  • Community annotation for 5TEE at PDBWiki (http://pdbwiki.org)

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