5TF6 Rna Binding Protein Rna date Sep 24, 2016
title Structure And Conformational Plasticity Of The U6 Small Nucl Ribonucleoprotein Core
authors E.J.Montemayor, D.A.Brow, S.E.Butcher
compound source
Molecule: U4u6 Snrna-Associated-Splicing Factor Prp24
Chain: A, C
Fragment: Unp Residues 34-400
Synonym: U4u6 Snrnp Protein
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Prp24, Ymr268c, Ym8156.10c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a

Molecule: U6 Snrna
Chain: B, D
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.921 84.446 255.142 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, GOL, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure and conformational plasticity of the U6 small nuclear ribonucleoprotein core., Montemayor EJ, Didychuk AL, Liao H, Hu P, Brow DA, Butcher SE, Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):1-8. doi:, 10.1107/S2059798316018222. Epub 2017 Jan 1. PMID:28045380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (5tf6.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (5tf6.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 5TF6
  • CSU: Contacts of Structural Units for 5TF6
  • Structure Factors (1853 Kb)
  • Retrieve 5TF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TF6 from S2C, [Save to disk]
  • Re-refined 5tf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TF6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tf6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tf6] [5tf6_D] [5tf6_C] [5tf6_A] [5tf6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TF6
  • Community annotation for 5TF6 at PDBWiki (http://pdbwiki.org)

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