5TGH Protein Transport date Sep 27, 2016
title Structure Of The Snx5 Px Domain In Complex With Chlamydial P Ince In Space Group P32
authors B.Collins, B.Paul
compound source
Molecule: Sorting Nexin-5
Chain: A, C, E, G
Fragment: Unp Residues 22-170
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snx5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ince
Chain: B, D, F, H
Fragment: Unp Residues 110-132
Engineered: Yes
Organism_scientific: Chlamydia Trachomatis
Organism_taxid: 813
Gene: Ince
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.236 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.640 100.640 71.650 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceStructural basis for the hijacking of endosomal sorting nexin proteins by Chlamydia trachomatis., Paul B, Kim HS, Kerr MC, Huston WM, Teasdale RD, Collins BM, Elife. 2017 Feb 22;6. pii: e22311. doi: 10.7554/eLife.22311. PMID:28226239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (5tgh.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (5tgh.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (5tgh.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (5tgh.pdb4.gz) 28 Kb
  • CSU: Contacts of Structural Units for 5TGH
  • Structure Factors (189 Kb)
  • Retrieve 5TGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TGH from S2C, [Save to disk]
  • Re-refined 5tgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TGH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tgh_E] [5tgh] [5tgh_B] [5tgh_G] [5tgh_C] [5tgh_A] [5tgh_D] [5tgh_H] [5tgh_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TGH
  • Community annotation for 5TGH at PDBWiki (http://pdbwiki.org)

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