5THA Gemin5 WD40 repeats in complex with a guanosyl moiety date
authors Chao, X., Tempel, W., Bian, C., Cerovina, T., He, H., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2004
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GP3, UNX enzyme
Primary referenceStructural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly., Xu C, Ishikawa H, Izumikawa K, Li L, He H, Nobe Y, Yamauchi Y, Shahjee HM, Wu XH, Yu YT, Isobe T, Takahashi N, Min J, Genes Dev. 2016 Nov 1;30(21):2376-2390. Epub 2016 Nov 10. PMID:27881600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5tha.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 5THA
  • CSU: Contacts of Structural Units for 5THA
  • Structure Factors (7395 Kb)
  • Retrieve 5THA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5THA from S2C, [Save to disk]
  • Re-refined 5tha structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5THA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5THA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tha_A] [5tha]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5THA: [WD40 ] by SMART
    • Other resources with information on 5THA
  • Community annotation for 5THA at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science