5TJH Oxidoreductase date Oct 04, 2016
title Hugdh A136m Substitution
authors N.R.Beattie, Z.A.Wood
compound source
Molecule: Udp-Glucose 6-Dehydrogenase
Chain: A, B, C, D, E, F
Fragment: Unp Residues 1-494
Synonym: Udpgdh
Ec: 1.1.1.22
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ugdh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.171 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.350 104.590 107.710 64.82 68.35 73.72
method X-Ray Diffractionresolution 2.05 Å
ligand CL, POP, UPG enzyme Oxidoreductase E.C.1.1.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceAllostery and Hysteresis Are Coupled in Human UDP-Glucose Dehydrogenase., Beattie NR, Keul ND, Sidlo AM, Wood ZA, Biochemistry. 2016 Dec 22. doi: 10.1021/acs.biochem.6b01044. PMID:27966912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (916 Kb) [Save to disk]
  • Biological Unit Coordinates (5tjh.pdb1.gz) 906 Kb
  • LPC: Ligand-Protein Contacts for 5TJH
  • CSU: Contacts of Structural Units for 5TJH
  • Structure Factors (5884 Kb)
  • Retrieve 5TJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TJH from S2C, [Save to disk]
  • Re-refined 5tjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tjh_B] [5tjh_D] [5tjh_F] [5tjh_A] [5tjh_E] [5tjh_C] [5tjh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TJH: [UDPG_MGDP_dh_C ] by SMART
    • Other resources with information on 5TJH
  • Community annotation for 5TJH at PDBWiki (http://pdbwiki.org)

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