5TKE Hydrolase date Oct 06, 2016
title Crystal Structure Of Eukaryotic Hydrolase
authors B.Li, J.Jiang
compound source
Molecule: O-Glcnacase: Chimera Construct
Chain: A, B
Fragment: Unp Residues 60-542; Unp Residues 553-704
Synonym: Oga,Beta-N-Acetylglucosaminidase,Beta-N- Acetylhexosaminidase,Beta-Hexosaminidase,Meningioma-Express 5,N-Acetyl-Beta-D-Glucosaminidase,N-Acetyl-Beta-Glucosamini Nuclear Cytoplasmic O-Glcnacase And Acetyltransferase,Ncoat
Ec: 3.2.1.169,3.2.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgea5, Hexc, Kiaa0679, Mea5
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.060 96.576 89.282 90.00 115.04 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand
enzyme Hydrolase E.C.3.2.1.169 BRENDA
Primary referenceStructures of human O-GlcNAcase and its complexes reveal a new substrate recognition mode., Li B, Li H, Lu L, Jiang J, Nat Struct Mol Biol. 2017 Mar 20. doi: 10.1038/nsmb.3390. PMID:28319083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (306 Kb) [Save to disk]
  • Biological Unit Coordinates (5tke.pdb1.gz) 300 Kb
  • CSU: Contacts of Structural Units for 5TKE
  • Structure Factors (667 Kb)
  • Retrieve 5TKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TKE from S2C, [Save to disk]
  • Re-refined 5tke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tke_B] [5tke_A] [5tke]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TKE
  • Community annotation for 5TKE at PDBWiki (http://pdbwiki.org)

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