5TLJ Immune System date Oct 11, 2016
title Complex Between Human Cd27 And Fab Fragments Of Antibodies M M2191
authors A.Teplyakov, G.Obmolova, T.Malia, G.L.Gilliland
compound source
Molecule: M2177 Light Chain
Chain: A, E
Engineered: Yes
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Human, Mouse
Organism_taxid: 10090, 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: M2177 Heavy Chain
Chain: B, F
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Human, Mouse
Organism_taxid: 10090, 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: M2191 Light Chain
Chain: C, G
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Human, Mouse
Organism_taxid: 10090, 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: M2191 Heavy Chain
Chain: D, H
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Human, Mouse
Organism_taxid: 10090, 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Cd27 Antigen
Chain: X
Fragment: Extracellular Domain Residues 21-121
Synonym: Cd27l Receptor,T-Cell Activation Antigen Cd27,T14, Necrosis Factor Receptor Superfamily Member 7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd27, Tnfrsf7
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 1 21 1
R_factor 0.283 R_Free 0.356
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.080 52.960 143.410 90.00 112.19 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand NAG, PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (5tlj.pdb1.gz) 146 Kb
  • Biological Unit Coordinates (5tlj.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5TLJ
  • CSU: Contacts of Structural Units for 5TLJ
  • Structure Factors (303 Kb)
  • Retrieve 5TLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TLJ from S2C, [Save to disk]
  • Re-refined 5tlj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tlj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tlj_G] [5tlj_H] [5tlj_B] [5tlj_F] [5tlj] [5tlj_A] [5tlj_E] [5tlj_D] [5tlj_X] [5tlj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TLJ
  • Community annotation for 5TLJ at PDBWiki (http://pdbwiki.org)

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